R packages
| Package | GRBIO Authors |
Description | Repo |
|---|---|---|---|
| R Packages | |||
|
flowchart |
Pau Satorra, Cristian Tebé, Natalia Pallarés | Creates participant flow diagrams directly from a dataframe. | |
|
REDCapDM |
João Carmezim, Cristian Tebé, Natalia Pallarés | A comprehensive package that enables users to seamlessly handle data exported directly from REDCap or through API connections | |
|
AIImagePred |
Toni Monleón | Automatic Image recognizement and prediction based on Deep-Learning | |
| BasicP | Alex Sanchez | Read data from cel files or loads previously saved data and normalize the raw data. | |
| BDSbiost3 | Toni Monleón | Machine learning and advanced statistical methods for omic, categorical analysis and others | |
| CompAREdesign | Marta Bofill, Jordi Cortés, Lupe Gómez | CompAREdesign package allows to design clinical trials with composite endpoint dealing with sample size, effect size and relative efficiency. | |
| dbcsp | Conxita Arenas | A way to apply Distance-Based Common Spatial Patterns techniques in different fields, both classical Common Spatial Patterns and DB-CSP | |
| Diagnobatch | Toni Monleón | Diagnosis of variability intra factor levels for one or multiple variables: applications to bioequivalence, batch effect, design of experiments, production, etc | |
| FHtest | Klaus Langohr | Functions to compare two or more survival curves with: a) The Fleming-Harrington test for right-censored data; b) An extension of the Fleming-Harrington test for interval-censored data. | |
| fobitools | Pol Castellano, Alex Sanchez | Set of tools for interacting with FOBI (Food-Biomarker Ontology). Basic manipulation tools for biological significance analysis, graph visualization and text mining strategies for annotating nutritional data | |
| GANGO | Toni Monleón | Advanced methods to interpret metagenomic / metatranscriptomic data based on networks and gene ontologies | |
| GofCens | Klaus Langohr, Mireia Besalú, Lupe Gómez | Graphical tools and goodness-of-fit tests for right-censored data. | |
| goProfiles | Alex Sanchez | Statistical Analysis of Functional Profiles. Functions for equivalence based similarity analysis of multiple gene lists. | |
| ICGE | Conxita Arenas | An R package for detecting relevant clusters and atypical units in gene expression. | |
| MARLIT | Toni Monleón | An artificial intelligence-based app to study floating marine macro-litter | |
| MetagenOutLDA | Toni Monleón | A R library for discriminating groups based on abundance profile and biodiversity in microbiome metagenomic matrices | |
| ORdensity | Conxita Arenas | User-friendly R package to identify differentially expressed genes. | |
| POMA | Pol Castellano | Structured, reproducible and easy-to-use workflow for the visualization, pre-processing, exploration, and statistical analysis of metabolomics and proteomics data. | |
| SurvBin | Marta Bofill | Class of two-sample statistics for testing the equality of proportions and the equality of survival functions | |
| survmixer | Marta Bofill | Sample size and effect size calculation for overall survival given the information on short-term binary endpoints. | |
| VisionBioShape | Toni Monleón | Facilitating the Automatic Characterisation, Classification and Description of Biological Images | |
| WeDiBaDis | Conxita Arenas | Weighted Distance Based Discriminant Analysis. | |
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